PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G197800.1
Common NameB456_005G197800, LOC105796214
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 273aa    MW: 30133.9 Da    PI: 4.6858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G197800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-193684355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + GVr+++ +gr++AeIrdps+   + r++lg+f+taeeAa a+++a+++++g
  Gorai.005G197800.1 36 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 84
                        67******.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.60E-303491No hitNo description
PROSITE profilePS5103220.3363592IPR001471AP2/ERF domain
SMARTSM003801.6E-333598IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-203693IPR016177DNA-binding domain
PRINTSPR003673.4E-83647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-283692IPR001471AP2/ERF domain
PfamPF008475.5E-123884IPR001471AP2/ERF domain
PRINTSPR003673.4E-85874IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDFNNSKINS PSSSKNKRKQ QQKQPQQQQQ QQEARFLGVR RRPWGRYAAE IRDPSTKERH  60
WLGTFDTAEE AALAYDRAAR SMRGSKVRTN FVYSDMPVGS SVTSIISPDE SQHDMSSIFP  120
IHPPFHQQTD ANQNQLFFTQ DPFNACHFSS GWNQESSDTL VSYTPITGVM DAAGNGGSQQ  180
FSDDCELPPL PPDVSSTCYG SGVDMSYTYG SWSDTGLLGS ADGFDSGVSQ PFFDFNSYEL  240
MQHTPVFGKI PSVPDTVAEG FDLGSSSSGY FF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-193691359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481246.10.0PREDICTED: ethylene-responsive transcription factor LEP
SwissprotQ9FZ902e-50ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBLA0A0D2RIH90.0A0A0D2RIH9_G
STRINGPOPTR_0001s12820.18e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.16e-39ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]